scProximitE

scProximitE is a framework for the in-depth evaluation of 17 proximity metrics performance with respect to core structural properties of scRNA-seq data, including sparsity, dimensionality, cell population distribution and rarity.

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Running scProximitE

Check out our install instructions and then try out the tutorials.

Extending scProximitE

If you want to add your new distance metrics that’s great, feel free to add any new ones!

  1. Make a pull request on github - we have made the code extendable for the loss function etc.

Citing scProximitE

Sci-viso can be cited as in References, where we also provide citations for the used tools.

Getting started

Running SCproximitE

Reproducibility

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